cobrapy
k-dense-aiSimulate metabolism and test engineering hypotheses.
metabolic modeling
What it does
Perform constraint-based metabolic modeling for systems biology and metabolic engineering analysis.
When to use it
Use it for loading, building, or exporting metabolic models; running flux analyses; knockout studies; media optimization; gap-filling; or model validation.
How to use it
Give it a metabolic modeling task; it performs the requested COBRA analysis and returns the results.
What you provide
- a metabolic modeling task
Access · 3
This skill
cobra==0.31.1
Execute
Installs COBRApy
BiGG and BioModels
Read
Loads remote metabolic models
https://arxiv.org/abs/2609.00065
Read
Checks the current citation record
What you need · 3
Requires Python 3.9 or newer.
Requires the cobra 0.31.1 Python package.
Optionally enables MATLAB model I/O.
About this skill
- Visibility
- Public
- Repository
- k-dense-ai/scientific-agent-skills
- Created
- Oct 8, 2026
- Updated
- Oct 8, 2026
- Files
- 3