instrument-data-to-allotrope
Turn lab instrument exports into standard data.
What it does
Converts laboratory instrument exports into standardized ASM JSON, flat CSV, and reusable Python parsers.
When to use it
Use when scientists need to standardize instrument data for LIMS systems, data lakes, or downstream analysis.
How to use it
Give it laboratory instrument output files; it returns converted data files and exportable parser code with a summary and usage instructions.
What you provide
- Your files
What you need · 5
The conversion script runs with Python 3.
The pinned requirements specify allotropy 0.1.55 for native instrument parsing.
The pinned requirements specify pandas 2.0.3 for data manipulation and file reading.
Access · 1
This skill
pip install allotropy pandas openpyxl pdfplumber --break-system-packages
Installs instrument data parsing libraries