foldseek-structural-search
Find structural protein matches and their likely functions.
What it does
Finds structurally similar proteins from a supplied 3D structure, interprets their matches and functions, and saves Markdown and JSON results.
When to use it
Use only when the user supplies a physical .cif, .mmcif, or .pdb structure file and wants structurally similar proteins, not for a sequence, gene name, or UniProt ID alone.
How to use it
Give it a 3D protein structure file; it reports structural matches and inferred functions and saves Markdown and JSON result files.
What you provide
- Your files
Uses
What you need · 3
Requires uv installed and on PATH; directs the agent to the uv skill's setup instructions.
The search script requires Python 3.10 or newer.
The search script declares polite-http as a dependency.
Access · 1
This skill
Foldseek
Uploads your protein structure to Foldseek