unibind-database
google-deepmind1.9k installs
Find validated binding sites and download their coordinates.
What it does
Finds experimentally validated transcription-factor binding datasets and retrieves their binding-site coordinates for local analysis.
When to use it
Use to retrieve direct TF–DNA interaction datasets, download BED/FASTA coordinates, or list datasets by species, cell line, or transcription factor.
How to use it
Give it a dataset lookup or binding-site download request; it returns query results or downloads BED/FASTA files to the specified directory.
Uses
Good to know
- cannot be undone: BED/FASTA files
Latest review
What you need · 4
Requires uv installed and available on PATH.
The API wrapper requires Python 3.10 or newer.
Access · 2
This skill
BED/FASTA files
Write
Overwrites existing binding-site downloads (irreversible)
UniBind
Read
Queries UniBind and downloads binding sites