cobrapy
k-dense-ai1.7k installs
Predict metabolic fluxes with COBRApy models.
What it does
Analyzes metabolic networks to produce constrained flux predictions, knockout screens, medium designs, and gap-filling hypotheses.
When to use it
Use for constructing metabolic networks, optimizing steady-state fluxes, screening knockouts, designing media, sampling feasible fluxes, or proposing missing reactions.
How to use it
Give it a metabolic modeling task; it produces model analyses and saves exported models and CSV/PNG results in the task's chosen directory.
Uses
Good to know
- advertises something the task does not need
Latest review
What you need · 2
Requires Python 3.9 or later; the examples were tested with Python 3.12.
Requires the cobra package and targets version 0.32.1.
Access · 2
This skill
arXiv
Read
Checks the current arXiv citation
cobra
Execute
Installs the cobra package