pathml
Reproducible local analysis of pathology slides.
What it does
Guides reproducible local pathology-image analysis with PathML, from slide preparation through bounded inference and provenance reporting.
When to use it
Use for research workflows involving whole-slide H&E, CODEX, Vectra, Mesmer, HoVer-Net, or HACTNet.
How to use it
Give it local pathology slides and an analysis request; it develops a bounded research workflow with saved analysis data, QC, and provenance.
What you provide
- Your files
Uses
Good to know
- advertises something the task does not need
What you need · 7
The PathML dependency stack requires Python 3.10–3.12; the bundled standard-library planners and validators need Python 3.10+.
The analysis guidance targets pathml==3.0.8 and provides a pinned installation command.
Access · 2
This skill
https://arxiv.org/abs/2609.00065
Fetches the current citation record
pathml
Installs the pinned PathML package