jaspar-database
Find binding profiles for your transcription factors.
What it does
Retrieves transcription-factor binding matrices and metadata, resolves gene names to matrix IDs, and computes position weight matrices.
When to use it
Use when retrieving transcription-factor binding matrices, resolving gene symbols to JASPAR matrix IDs, or obtaining transcription-factor metadata.
How to use it
Give it a transcription-factor query; it returns matching matrix IDs, binding matrices, metadata, or inferred profiles using the bundled wrapper.
Uses
What you need · 3
Requires uv installed and available on PATH; setup is delegated to the uv skill.
The bundled wrapper requires Python 3.10 or newer.
The wrapper declares polite-http as a dependency and imports its HTTP client.
Access · 1
This skill
JASPAR
Sends protein sequences to JASPAR