scanpy
k-dense-ai1.7k installs
Turn single-cell RNA data into clusters and plots.
What it does
Analyzes single-cell RNA-seq counts to produce clustered datasets, exploratory marker tables, and figures.
When to use it
Use for single-cell RNA-seq analysis, including quality control, visualization, clustering, marker identification, cell-type annotation, and trajectory analysis.
How to use it
Give it single-cell count data and an analysis request; it returns processed datasets, marker tables, and figures.
What you provide
- Your files
Uses
Good to know
- advertises something the task does not need
Latest review
What you need · 7
Requires Python 3.12 or newer.
Requires Scanpy; the documented installation includes the Leiden clustering extra.
Access · 3
This skill
arXiv
Read
Fetches the skill paper's citation
scanpy[leiden]
Execute
Installs Scanpy with Leiden support