single-cell-rna-qc
anthropics2.3k installs
Clean single-cell RNA data with adaptive filtering.
What it does
Checks single-cell RNA-seq data and produces filtered datasets, QC annotations, and before-and-after quality plots.
When to use it
Use for single-cell RNA-seq quality control, low-quality cell filtering, QC visualizations, or MAD-based outlier detection.
How to use it
Give it a single-cell RNA-seq .h5ad or 10X .h5 file; it saves filtered and QC-annotated datasets with quality-control plots.
What you provide
- Your files
Latest review
What you need · 7
Requires Python 3 to run the recommended complete QC pipeline.
Lists anndata as a requirement for the complete QC pipeline.
Lists scanpy as a requirement for the complete QC pipeline.
Lists scipy as a requirement for the complete QC pipeline.
Access · 0
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