bulk-rnaseq
k-dense-ai1.3k installs
Turn bulk RNA-seq reads into analysis-ready counts.
What it does
Prepares validated gene-level counts and sample metadata from bulk RNA-seq reads or quantification output for downstream differential expression.
When to use it
Use for bulk RNA-seq reads-to-counts analysis, pipeline configuration, quantification, count-matrix assembly, or experimental-design checks.
How to use it
Give it bulk RNA-seq reads or quantification files; it produces validated gene-level counts, provenance, and a sample-metadata template.
What you provide
- Your files
Uses
Good to know
- advertises something the task does not need
Latest review
What you need · 7
Requires Python 3.11 or newer for the Python validation and count-assembly workflow.
Requires pandas for the bundled table-validation and count-assembly scripts.
Access · 4
This skill
arXiv
Read
Fetches the skill library's paper
pytximport
Execute
Installs pytximport