nextflow-development
anthropics2.3k installs
Analyze sequencing data with nf-core pipelines.
What it does
Produces gene-expression, variant-calling, or chromatin-accessibility results from sequencing data using nf-core pipelines.
When to use it
Use for RNA-seq, WGS/WES, or ATAC-seq analysis using local sequencing files or public GEO/SRA datasets.
How to use it
Give it local sequencing files or a public dataset accession; it confirms the pipeline and genome with you and produces analysis results.
What you provide
- Your files
Uses
EN
IG
Latest review
What you need · 6
Python 3 runs the bundled environment-check and data-preparation scripts.
The main workflow requires Docker on PATH, a running daemon, and permission to connect to it.
Access · 8
This skill
GEO/SRA
Read
Fetches public sequencing study metadata
ENA
Read
Downloads public sequencing reads