deeptools
k-dense-ai1.7k installs
Turn sequencing data into coverage maps and plots.
What it does
Produces quality-control results, normalized coverage tracks, and genomic visualizations from sequencing data using deepTools.
When to use it
Use for sequencing-file conversion, quality control, sample comparisons, heatmaps, and ChIP-seq, RNA-seq, or ATAC-seq analysis workflows.
How to use it
Give it sequencing files and an analysis request; it creates a customized workflow and guides execution to produce analysis files and plots.
What you provide
- Your files
Uses
Good to know
- advertises something the task does not need
Latest review
What you need · 3
Requires Python 3.12 or newer.
Requires deepTools 4.0.0, including pysam and pyBigWig; installation instructions are provided.
Access · 2
This skill
arXiv
Read
Looks up the citation on arXiv
deepTools
Execute
Installs deepTools in a virtual environment