encode-ccres-database
google-deepmind1.9k installs
Find regulatory elements and their experimental evidence.
What it does
Retrieves regulatory-element annotations, gene associations, expression data, and experimental datasets from ENCODE.
When to use it
Use when querying regulatory annotations or raw experimental data across human cell types.
How to use it
Give it an ENCODE data query; it retrieves the results through helper scripts and saves JSON in a temporary location.
Uses
SC
EN
Good to know
- works out of sight
Latest review
What you need · 3
Requires uv installed and on PATH; the instructions direct the agent to the uv skill for setup.
The query scripts require Python 3.10 or newer.
Access · 2
This skill
SCREEN
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Queries SCREEN regulatory data
ENCODE Portal
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Searches ENCODE experimental datasets