cellxgene-census
k-dense-ai1.7k installs
Public cell data, narrowed to the populations you need.
What it does
Retrieves public single-cell and spatial transcriptomics metadata, expression slices, embeddings, and source dataset information for analysis.
When to use it
Use for querying single-cell data, exploring datasets, cross-dataset analysis, machine learning, or accessing precomputed embeddings.
How to use it
Give it a public Census data query; it returns selected metadata, expression data, or analysis results.
Uses
CC
Good to know
- advertises something the task does not need
Latest review
What you need · 5
Requires Linux or macOS.
Requires Python 3.10 or newer; the stated tests used Python 3.12.
Access · 3
This skill
CZ CELLxGENE Census
Read
Reads public Census data
arXiv
Read
Checks the authors' paper metadata