gtex-database
google-deepmind2k installs
Find where genes are expressed and variants affect them.
What it does
Retrieve gene-expression baselines and significant eQTL associations across human tissues from GTEx.
When to use it
Use for gene-ID mapping, median expression, highest-expressing tissues, and gene or regional eQTL queries, including GWAS contextualisation.
How to use it
Give it a gene or chromosomal region to query; it saves the requested GTEx results as JSON files under /tmp/.
What you provide
- a gene or chromosomal region
Uses
GT
Good to know
- cannot be undone: /tmp/gtex_output.json
Security reviews
Not yet reviewed.
What you need · 3
Requires uv installed and available on PATH; setup is delegated to the uv skill.
The query script requires Python 3.10 or later.
Access · 2
This skill
/tmp/gtex_output.json
Write
Overwrites existing default output (irreversible)
GTEx
Read
Queries GTEx expression and eQTLs