phylogenetics
From homologous sequences to trees you can interpret.
What it does
Builds phylogenetic trees from homologous sequences and provides branch-support interpretation, tree summaries, and optional figures.
When to use it
Use for aligning homologous loci or proteins, inferring gene trees, assessing branch support, and producing interpretable tree figures.
How to use it
Give it homologous sequences or a reviewed FASTA alignment; it produces an inferred tree and analysis files, with optional visualization.
What you provide
- Your files
What you need · 6
Requires Python to run the bundled analysis helper.
Requires the MAFFT executable on PATH for the default alignment workflow.
Requires IQ-TREE 3 for the default inference path; the helper defaults to the iqtree3 executable.
Enables optional tree summaries and visualization. The documented environment uses ete3 3.1.3 with Python 3.12; ETE3 imports cgi, which Python 3.13 removed.
Access · 0
No additional actions listed.