waypoint-bio

Produces microbiome sample embeddings, trained prediction models, and benchmark results, with guidance for preparing taxonomic abundance data.

When to use it

Use for embedding microbiome profiles, fine-tuning phenotype predictors, evaluating models on Compass, pretraining taxonomic models, or converting profiler output.

Give it microbiome abundance files and a modeling request; it produces converted datasets, embeddings, trained models, or benchmark results.