tiledbvcf
k-dense-ai1.7k installs
Store variant cohorts and retrieve the subsets you need.
What it does
Organizes genomic variant files into queryable cohorts and exports selected records for downstream analysis.
When to use it
Use for cohort variant storage, incremental sample ingestion, interval queries, and subset exports.
How to use it
Give it genomic variant files and a storage or retrieval request; it builds cohorts, queries records, computes statistics, or exports subsets.
What you provide
- Your files
Uses
TC
Latest review
What you need · 6
The reviewed native Conda builds require Python 3.9–3.12.
Requires the native TileDB-VCF stack; the documented Conda package is tiledbvcf-py 0.40.3, not the tiledb package on PyPI.
Access · 2
This skill
tiledbvcf-py
Execute
Installs native TileDB-VCF
tiledb-cloud
Execute
Installs the TileDB Cloud client